Scaffold Ga0079957_1000633

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1000633
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31743
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (78.21%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022399	Metagenome	214	Y
F022870	Metagenome	212	Y
F023329	Metagenome / Metatranscriptome	210	N
F024101	Metagenome	207	Y
F031460	Metagenome / Metatranscriptome	182	Y
F033009	Metagenome / Metatranscriptome	178	Y
F063633	Metagenome	129	Y
F084156	Metagenome / Metatranscriptome	112	N
F089988	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100063317	F089988	AGTAG	MIVVGTTTAAFAMDNPDTWGSWMRNAEAVKENFQRFANFSDIKYFAALQVDARGIEPFKPFIERLNAIGGEYWTYSLDDGRTSVTTRNRLRHLTVGQNLVTDYCVSNPGITHQLFMAADCMPPDDVIPKMLEMNYPLCAPFITTYNLRGPRVPEYPYHVENAMASAAAIFISRQVFSKIRWRWDLDTNMSDDPCYHNDAIKYLGIPTHVRHDCIAKHFPESIGAIETRGHDMTVHR*
Ga0079957_100063350	F031460	GGAG	MAKYIDSVEVNLQMWATVSLSAEEIADIYPAFNDMTDFDDTDELETAIQEYMDMNYMDHVQYSDGALDECTVNVVIEDDGSE*
Ga0079957_100063351	F023329	AGG	MVEEIEDKELKQLEAYFKYNISTDEILSGRLKVLMADLSWQMDMPTWTKEELDVMCARMDALVEVSNLLYDIQWHRLNWERKQNG*
Ga0079957_100063354	F084156	AGGAG	MQGSSLCWYDTKQGDNCKWECSDIPGLFYCINCDRLRQWDRFAQAYSIYVREGHYA*
Ga0079957_100063355	F022399	AGGTGG	MNSKYVNIYSKNGLEVFVNPEDYWADYKVRLNGRHAKTFKGETAWMDVTRFVHDQALEFWDFDVDGIHRQWKTDLLEEIERRFTDAGI*
Ga0079957_100063362	F063633	N/A	MSNTYKDRKVAHVQGLRRSGASGIHKNKVKDRQKRLSNAKIWKDYLKDENE*
Ga0079957_100063364	F024101	GGAG	VPKEKPIHKMVNEVFDKQLENDLIDEIAEERNFIVNTLKSWIETDEMWEQMVDNKDARKLFLMNMQMLFLTELENSTLIELATTKHEDK*
Ga0079957_100063368	F033009	GAGG	MSNSTQLWYAGTITQFGDMQKIYEDETLWTLESKDGSWASVILDGADVYNVRGEGAWNLARKVAESLLLKREQAEQEGWVK*
Ga0079957_100063378	F022870	GAG	MKLTQRGKYVMVIIYTIVMTLLLVGVYDKFISGQSCIDKYTADILATQFLYSEGIDRDHAITAIYNNGGWVENEYEELEEVVFPCLKNEGLV*