Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1000550 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1000550 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33693
Total Scaffold Genes	73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	60 (82.19%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

33693

Total Scaffold Genes

73 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

60 (82.19%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F001507	Metagenome / Metatranscriptome	681	Y
F005745	Metagenome / Metatranscriptome	391	Y
F027449	Metagenome / Metatranscriptome	194	Y
F034902	Metagenome / Metatranscriptome	173	Y
F049499	Metagenome	146	Y
F058095	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100055027	F027449	GGA	VYTDNMRRAFRSIPAPKNFAISLIDNEHFLTIKLDERSFLPLTHDEKMEAVKYVTLVKKALEMEGAVVLVTREPLK*
Ga0079957_100055055	F005745	AGGA	MEITPTTLDPYLQRQVNHGISGIDIMHGHLKVLMLEAEQQLTEAQRIEEENDFSDAMESMERKYWEGQFDALSNLYSLTYDLSFAIGLIEENRKDGHL*
Ga0079957_100055059	F001507	AGGAG	MSKLYTIDELVTTIYEDNLSHFEFMENMNGGDCDCALHNTMTTVLQYWGS*
Ga0079957_100055066	F034902	AGGA	MISTALAIQEATKNAVHDEEVMGMASAIFHHRHELDEEDFIKAMFMYSAHLSAMTATLVTHACLTESQLNDMLETIKEMETMGKDIE*
Ga0079957_100055067	F000684	AGGA	MTLGGYTYQVGDLFTTSKTGVTGRIHSFTPIRQNVTRVGLTLSNGAKRFAMVKTY*
Ga0079957_100055072	F049499	AGG	MLTMDYRMVDVLNADQLEEGDLIGIAEGIVKIISITPTSEGFVLINEDEYGERDVLEIFDNEQFELFVLD*
Ga0079957_100055073	F058095	N/A	AYDGELFSTLRISDFLEAHEAWAKCSDHGNAKEYATYNLTDPTGKMYTKNFYANGKVSIK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1000550

Overview

Ecosystem & Geography

Associated Families

Sequences