Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1000493 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1000493 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35534
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (48.94%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

35534

Total Scaffold Genes

47 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (48.94%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004256	Metagenome	446	Y
F024484	Metagenome / Metatranscriptome	205	Y
F029410	Metagenome / Metatranscriptome	188	Y
F029568	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100049311	F004256	N/A	MELNYYWNNVPGVGLCRNNLIYTSLMSADKKLFVQWYYNDPEYHKGQNEILDPSKMEEKWLREVNYLTQMRNRYPDLIPNIVKIDLDNRKLYLEVDGIDFWNRANCATENYDQVLPDWQDQMLNIIEAHKSLGLYKFSMHPSSYFIVNGRLKSINYFFTYAQHEGPISIADHSSHIFSTRQNIMRQQVEEMGLDWYEPQPLNKLQKLCFESFRTNYPADFIEKAKAIYD*
Ga0079957_100049314	F024484	AGG	MLSKTNYTVDVSIFQEACNQLPHRDMKTTINQPTGNFFYDEWELKEEFKGTVWETLYNSLPVTKGETRIIILDPAHCYQTHADIDDRYHLNILGEACYLIDLVNEQMHGLEQDGVWYDMNAGLLHTAANFGRRARVQLVVRHLLKKNQLLEPVEITLSSTVSNTDDARFIFDNTLSPWLNKANKLGYINNFSYSPITVKFNIEKNKLDLFNSILPTEFMLL*
Ga0079957_100049317	F029410	AGGA	MNYHNIDNCLVPFDHTWSSIAVSVSGGADSALLAYLICDLSKEHDITIHIINHVRCWKTKPWQQDNVNDVYNWLFQRFYHTKFVRHTNFIAPELEYGDVGPILTDEYGKKVSGDNIQQRAYAEFVCHKYDINAYYNAVTRNPIAVDLGGMEERNVDADDSNQHLRIMKHMDRWAIHPFRFVDKSWVISQYKRLEIIDLLELTRSCEGTFEELDFTNYTKGQYVPVCGECFWCKERRWAIDQ*
Ga0079957_10004937	F029568	N/A	MLNRYDLTDTHIVVYYQSNKEFEHVRDLCLQEDNWLRHNYTKDNLKIEDHYGYGVVYQISTGQPMVMGGVFNDGRYPKNIAKMINRLYTFPKFRMTHTDMTDGFRVTCSLIERLINDNDFDCYLITMQNRPRGGKRWWDIWKHHMDIASQHKWQHGDGYIQTCPWAVQKCWQNYVYRNLKDMTFETWNPTIISHNDWIALPEGK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1000493

Overview

Ecosystem & Geography

Associated Families

Sequences