Scaffold Ga0079957_1000440

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1000440
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37118
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 63 (91.30%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F025745	Metagenome / Metatranscriptome	200	N
F088888	Metagenome / Metatranscriptome	109	Y
F090395	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100044041	F088888	AGGAG	MKLTKRGKRVRAVFILIGLFAIWQVSMNLWWTEDGYCWGTMVKCMLDD*
Ga0079957_100044055	F000368	AGGA	METLKQVALTWFRAAAAAAIALYLAGETDLKVLGTAALAGFLGPVLKWLDSSAPEFGRSK
Ga0079957_100044059	F090395	GAGG	MNSYSVGFNNDGILILEPITAMDKDEAKIKAQPLHPDLNIILVKLTKQGG*
Ga0079957_100044061	F025745	N/A	MPANAPTLTVSFSNGGAFTAVSADLLLSVDIRRGRQYQNDFLEAGTADVVLNNQSGAFDPSNTSSPWYGILIAGMQVRIQGNGITIYTGFLENNEVNQGIYPTVSLTFVDGLAQIAKAIAPALAVSDFSESASARATRALDLAEWTGGRSLTGTTVMQKTKQNMSCLEMLEQCANCVGGRFYVSRSGVATLVPISDKFTRPTRLLFSDQGDANSVGYDGIITNPGTDYVYNEAIVFRGPKKAQKTAKFTSSVATYGLKSKKLDAPILNETSAANLALYAARKDADAVVLAEQIDFTAIGIGALATDMLETELNDLVQVKRLTYDGRNITINCVVEGLAHSITADNWRVSYFTSVVDPYTITI*