Scaffold Ga0079957_1000433

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1000433
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37442
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (81.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000843	Metagenome / Metatranscriptome	864	Y
F009956	Metagenome / Metatranscriptome	310	Y
F036199	Metagenome	170	Y
F048937	Metagenome	147	Y
F082578	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100043312	F009956	GGCGG	VADNKKHDYENVPWSLIVVVLAVVLMFFIVMPVLAFMYYDMYYATQAAVHEVRKMRELRKEIQIERMYGQ*
Ga0079957_100043321	F000843	N/A	MPLYQIHPNELPQVWPIAAPLLQRAIDLDPDLNKIELLEYAIRTGRTYLVVWDEPGEGITGAAAIDILDYPTQRVAHGNLMGGKGIVRPHVIEELYNWMRSHGATVAQIWAKGSIVRMYEKVGLEVTHQVMRIKL*
Ga0079957_100043324	F082578	GGA	MNIEGMTEEPEWVFPYPYMQLGDSFFIPTLRPAQMIYLADIAAKKSDIRVKIFTCHKEGHLGVRVWRVG*
Ga0079957_100043333	F048937	AGGA	MRYEVYDDEGNLFRKFWDKHSAQRFMQEGWKLVVKDKQPKPSVETHGEARW*
Ga0079957_100043335	F036199	GGA	MIIDTINYKAVWAWLNAVWAKSFISILLFLLGLWIGTVQTEGRIAGDCKFANAFRVDIQAFACQRKL*