Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1000414 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1000414 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	38157
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (80.36%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

38157

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

45 (80.36%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F022860	Metagenome / Metatranscriptome	212	Y
F027495	Metagenome	194	Y
F033780	Metagenome	176	Y
F056573	Metagenome	137	Y
F060870	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100041410	F027495	GGAG	VKHRETHPNLDVEGCFACRVSHFRVSGAATPTRHNVSELNGKERQLDKDLDAYKRIRKTGGQPTQIDGSARLEATAN*
Ga0079957_100041425	F022860	AGGA	MKKFLSYVTENSWTLAGTGLVLITLSGPTLKQALWITGVALVLHSLLTFTQGEDSE*
Ga0079957_100041426	F003378	GAG	MEIANKTIAKFLDLGQRLFSLFLANALPAVTGGAVIGVSVAKSALLAGFMAVVQVIQKLAAASTDGELTSEEIAEAFGKK*
Ga0079957_100041428	F060870	GAGG	VDANAALIIAAAVTAVGGIIVAIIQQFRKENHTDHQVVVGLLHVLRKSQIRVEDKVDKVDERLDKHLEFHLDGGILDNRRTVDQTRVEGNSDLSA*
Ga0079957_100041431	F033780	N/A	MVKRMTAEELARCPWSLVAVHWIDAFDSQNGWINTKEYRAKPQHVISVGWLWPDLLEGYVSVTCSWCPDEEPEMETVGMVTHIPTGMVQKVVVLGEPDWVAKRIRTP*
Ga0079957_10004149	F056573	N/A	MSTFRPPTDDFVSLAIPPKEFDSQEKRLAFNLFRYFDNEPRGRNVFLLSDGTYTENEPNDITTITKVYWGGSENQVTEAEVASLTAAGYGEYIS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1000414

Overview

Ecosystem & Geography

Associated Families

Sequences