Scaffold Ga0079957_1000397

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1000397
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38866
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (10.53%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007108	Metagenome / Metatranscriptome	357	Y
F019832	Metagenome	227	N
F048306	Metagenome	148	N
F076073	Metagenome	118	Y
F077278	Metagenome	117	Y
F079619	Metagenome	115	N
F085162	Metagenome	111	Y
F090373	Metagenome / Metatranscriptome	108	Y
F092035	Metagenome	107	N
F092036	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100039721	F092036	N/A	MKNNRPPRAVFENVETLKAHDIQSSEILKTLIKNEVPKSIEYAIDNKKTFASIFEINDSNCYIELHKNQWIQALETCIIFFIEEEDYESCNKITKLIEKIKKKPKKVVAKQKL*
Ga0079957_100039722	F092035	N/A	MAEDFKEIQIAVDGILNVKSYVRRKKRTELDKKKEMFVQMMNSMEEITIRQALMYADMDVDMFKYDEKFLSIIDLMYYLYFGEACSDIIAFYLYDRRNPDGTLNALVDQSGQEIILESAYDLWNLMVSINPKIQE*
Ga0079957_100039727	F090373	N/A	MLHEYTKAELNSMETIEQAWDGDELKIKTDTHRIWLVLQENRPYNGDYVVETNVDGRWEQASYYFN*
Ga0079957_100039737	F077278	N/A	MILAVVDVNSLQFGLMQYGILGILAFLLGYFAWQQYLRLVKKNDELEAKVDKLQEDIMKLLIEERDRFDVLIRDNTAALQELQKMIYKYMVKNKE*
Ga0079957_100039751	F076073	AGG	MASVVELVDQIEHMFSKQPDKRKKAEHKEWKDTINKLIHDCNKLCKFKMYFVIK*
Ga0079957_100039753	F085162	N/A	MIKKLKQIWHEIIERWFLLTFYTERMERERLQVLAELVKRKDTLWKNIPVKSRTLKEILTYKEPKKMSIDELVEEYEKESPIIQDALYEALKNIQQKENGNNKKNNTEEIN*
Ga0079957_100039755	F048306	N/A	MTKEQAQFINKLCENSSTTWTMLHIEYQKKFVDPSLWYQSPSGYQKDLPLPHGNQIEGSELCKEAEKILNKI*
Ga0079957_100039762	F079619	N/A	MEEINIQEWDNLQPDPISNKTKIELALIDLYNRLEMPVPTNHQQILDELAEKLLSPEDSLTVKQVDGSLESSISETKLRVQANSPYNDGWTQEHYKKELQETENRGIPSPNFMYNWIRQKSGK*
Ga0079957_100039767	F019832	GAG	MIQSNASVSFNAVVSYTDILGKRHNIACRTRNQIKQANAFLSMFKREGTTVKALAAQYNVKCGKFQNVSRLINDIVMVGFTREAAKRIVASSL*
Ga0079957_100039769	F007108	N/A	MSTNSNRPSSYTKLSYIQKVSRINRKLRNGDITNVAAVTGFSTTHVSDVIAGKYFNEKIVNEAYDTTRGRISNAVKLSSLMA*