Scaffold Ga0079957_1000390

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1000390
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39031
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (84.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002722	Metagenome	534	Y
F016149	Metagenome / Metatranscriptome	249	Y
F051715	Metagenome / Metatranscriptome	143	Y
F083915	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100039021	F083915	AGGAGG	MVEDNLVSAAEAAEILGIKMNNLRQIQHRKSLVWVQKAGRNVYYKREDVMNYKAKRDARNG*
Ga0079957_100039037	F016149	AGGAGG	MGRFVAPDRGVKETVIGGKKYNPDKGGIYNVDNANHGAAMKREGFFEASLNPYAQGDYRRGFSCVQCGFDGWFRKCGRCGHENESPIARDGE*
Ga0079957_100039039	F002722	AGG	MGGRVGVRDTLAKFIANPPIATLNQVFTSFPKRINFQLNALPGQMTRSACVVFIAQERENRLAIGGAHSGWKRVDYTVILQLYVHSLHSNSEDAMSDFDILVDNIKERLRSDHNFGDSTGVLVWQGAEPVIIGRYGEPATSNEGATDIFAELEFDVTEMIQA*
Ga0079957_100039043	F051715	N/A	MEGGERHEAFTYPDEHWVYYVMADKFGWTPEQVDNLPASTADWLLAITGMVETVRADRLDKEL*