NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1000384

Scaffold Ga0079957_1000384


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1000384 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39137
Total Scaffold Genes77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)72 (93.51%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002420Metagenome / Metatranscriptome560Y
F009260Metagenome / Metatranscriptome320Y
F031073Metagenome / Metatranscriptome183N
F035733Metagenome171Y
F088552Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_100038424F002420AGGAGGMSFRTTTIKYIKDVLRLRTINEVIATELREAHLRKLEAETAAEYANAAIRYNEQRIARLTARLMEHTEEGDYT*
Ga0079957_10003844F088552GGAGMSALRPRTLSNTELIKYFAMYVDDNPMGAPLDWQIELLRRFMAVAPEKEFPPRDEAQRDLFI*
Ga0079957_100038441F035733AGGAGMNEPTQHFYASSVAQWATTTPERDLRQLLKLMDKDGYSYNLFLVPVAHDAMYDIKWYQPQVEGTQWLGFFEVKGKK*
Ga0079957_100038451F031073GGAMLEHLIDFEPEVATHSGKPTPLEKEHPADVIDAKVKTADWLKSMGVVDTDTVVTQAEVQAARASFTNLISSAPTEITHEHLTQIKTPAAVQHLVGMLTAYDWEFVQQAKELRGYTVAKLLEECENPNANIRLKALGLLGKVTEVGLFTDKIEVKKTDLTDEEIDKKLKDKLAAFMGVQDAEPIEDIEVSTPLPKESDEA*
Ga0079957_100038471F009260GGAGGMVDYKKPKSVPSVVVGEEPAKETMRKANVSVANVRSQDYPPTKTSGIKIRGTGAATKGVMARGPMA*
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