Scaffold Ga0079957_1000206

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1000206
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50478
• Total Scaffold Genes: 85
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (63.53%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002226	Metagenome / Metatranscriptome	580	Y
F004255	Metagenome / Metatranscriptome	446	Y
F048809	Metagenome / Metatranscriptome	147	Y
F054801	Metagenome	139	N
F078429	Metagenome	116	Y
F091309	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100020647	F002226	GAG	MSLISQQDRLMAIEALEYYVQKLKDDNCNQAAISSFQTLLNWIELEHFKYED*
Ga0079957_100020659	F078429	N/A	MTSTYVYFIIFACAGYLIVTDQSIAKAVFFVSQLIKNKFEIMKWWAMNNPKLPWVRYSMHRRSMKLAEELMKEFQDKN*
Ga0079957_100020665	F054801	AGGA	MTYKVRYTGFGPYKDKFEINQIFTVKEMLPYAWHENFTFEEVEGEYHTIFFEDVE*
Ga0079957_100020667	F091309	GGAGG	MSNPLKLNEEAKAFSYTPAELFNTIMCIVAHPHKTLTEHDKSRAMAIFVTFADYLNNYTESDNNGGHYVYESDATDFEGYVLELLGQAGLPGCDKVDVDEILK*
Ga0079957_100020671	F004255	GGA	MNEKSKIFFSVWCCAYQRRWIYKGTDREHREHETVRMCLDMKDVKFYKFDTEQPHYLK*
Ga0079957_100020679	F048809	GAG	MIKKFINWYFSSSSKSVEENIDLYSKIAKLEEKILHLENENVETSNCLYELSNHIDAVDARIDIIIVENLTNNV*