Scaffold Ga0079957_1000196

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1000196
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51744
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (40.68%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017641	Metagenome / Metatranscriptome	239	Y
F022640	Metagenome / Metatranscriptome	213	Y
F022879	Metagenome / Metatranscriptome	212	Y
F058109	Metagenome	135	Y
F066743	Metagenome / Metatranscriptome	126	Y
F105081	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100019627	F058109	N/A	MIETDFFILDGEQYQEHYTEAQQLGVSIDYYLMEFCDVEGDDVYV*
Ga0079957_100019632	F066743	GAG	MTQDQLIRSIEQQLENLMTLDDDLAYQYECELYYDCNEDEEPQPIVENFTPELLTELEKVIYEYD*
Ga0079957_100019635	F105081	N/A	MISLPNFTNKMELTQEQIYKLISLYAERVVDNMDVRDLCAFAIDTICDSMSDYKESELMEELSHYYDDEELQDMVESVKNV*
Ga0079957_100019636	F022640	N/A	MRIALLIATLALGLKVSIAAHATVNEYQEQQAELFCQTNPNYCK*
Ga0079957_100019641	F017641	N/A	MVFHYTTNWKEGKVCQMFIQQITPEYQECDHKYVAIALNPETNKSMVMSKPRSHYDTLQWVRKFCGSFCILPTYC*
Ga0079957_100019652	F022879	N/A	MTHHVAHTNKMLFELKEQYREQIRRLQNKINEQEQEITKLKTLISLLSIEREYDC*