Scaffold Ga0079957_1000193

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1000193
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52065
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 66 (86.84%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039099	Metagenome	164	Y
F065706	Metagenome / Metatranscriptome	127	Y
F076851	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100019344	F039099	AGGA	MRELNQRFWDAMIIKCWQDFSDCQKLNTWCYAEFGKFPQDLELKRVQNCFGNRGQGVRVWVAEYMPALSERLFALPKERHLEILDWLANSKVDSLTSKGSKSRKYYSEARSAMKAAERKATQKTWSDNLEKTINRNNQWTTVK*
Ga0079957_10001936	F065706	AGGA	VDKHLDYLLNEYRDRINMLQTAISAGNCANYEEYKYACGQIRGLESACLTITDLNQRMEKSND*
Ga0079957_100019362	F076851	GAGG	MGFFDSLIDTQTYQAQTLAKQGNPPAALPQTMPMPMAKGGLTSVNEKIKETQTLKVIENYFKNKGLPVEPAMAGVKKEIAAGLQLIPFESSVMGFKPLGKDVAQIHFFTVGTIKDLANDMRFFYKFLKDKGISTVYDSIPAPITIQMFQQLGAQVMRSDNPKYKFKATI*