Scaffold Ga0079957_1000134

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1000134
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59304
• Total Scaffold Genes: 86
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 75 (87.21%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005167	Metagenome / Metatranscriptome	410	Y
F008023	Metagenome / Metatranscriptome	340	Y
F008806	Metagenome	327	Y
F009327	Metagenome / Metatranscriptome	319	Y
F009741	Metagenome / Metatranscriptome	313	Y
F010448	Metagenome / Metatranscriptome	303	Y
F025484	Metagenome / Metatranscriptome	201	Y
F035737	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100013418	F009327	AGGAG	MRGNRVEGRFKIDYETSSMDEGMVDELRLPVGTTVDWWTWNPAAFVADYEEYIDPIYDTSNQTDGLGRRWDEPFDMPVILAQQIRGQNVMNERGFYTIDTLRLVIAVDDINRLLPDIITNPTDHIKDRVIFQNSVFTPTRVNPRGRYKERYSVVTIDLNQVNAEELVNDPQFQAYAE*
Ga0079957_10001342	F008023	AGGAG	VANKATSPLDATGVAAERAAKKNAAELKKRQEELSVANQLEAESLEKDVFDPKKPDAPLVLDEIEDVGVSVSNEYVVIRTITDIDDMTFGVVNGTPQSYSFKSGVKYRVPRHIADYLEQLGYIWRPN*
Ga0079957_100013430	F008806	N/A	MSFLLAEDEALRNLLLGMTVTDQKSVNEEGPQRTVGVWFGQPDQELRDQRYPYITIDMVDIAEDFSRSMRGRVKPKYLADPETMGTSEDDWDNDLHGWEVDFPIPVNIDYQITTYARQPRHDRQILAQLLYTKIPLRFAILETGPNTVAGTNRRLDVLDIAKRDVSENGKRLFVNAITVRVSSEIAPATYKKLYKVQNLEITGTDDNPQLGRGEFTAIDTITIP*
Ga0079957_100013449	F010448	AGAAG	MKDGDISNVSSPQLIATTDVVIKLVEEETRRLLGKKTSYKVGDIELLAANKLWLLSNNYGLSLELAGFESEGWSEELLDKAFEKLERRVVNPFNYWQLYENVDELVGLIPYRPNLKGIIDKPDRVARYGSAGIELANL*
Ga0079957_100013459	F035737	GGTGG	MMSNGFEVIDQEWAEELERGVEAYTDMLFEAIYEGTEEELTETLSGEPFCGCNRCFWRETLFYVVPKLLKGYEEGKIELEE*
Ga0079957_100013473	F009741	GAGG	MTQKYDGVYDYTKPWRAPVQPDQVAKRWQYNGPWSSNMERLTSQALMVMSIPGSEISQMVRPPLPQIRLFPDRYGYDRRAVGIDDVITVDRNYVEPRTSWYSGSPAGYTGASRNTLGSE*
Ga0079957_100013475	F025484	AGGAG	MADDGDGMLTLELQAQELTKYNGSSNCPTCGMIINPVEFLANQGHCTGCTTAKRQKRAKELMQ*
Ga0079957_100013477	F005167	AGG	MAVNSSRSMNKSLNDGATDGKYRKVRPDTEENAMNTSATEANRQSLHPFYGYGFTTTEYPNKVNPGK*