Scaffold Ga0079957_1000061

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1000061
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78518
• Total Scaffold Genes: 108
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (57.41%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000919	Metagenome / Metatranscriptome	834	Y
F016639	Metagenome / Metatranscriptome	245	Y
F020144	Metagenome / Metatranscriptome	225	Y
F024290	Metagenome / Metatranscriptome	206	Y
F099203	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100006138	F016639	N/A	MSKQVLISMLRQGNTGNEILSILDVIASDNVSSFDYIESPAIETALGIPTLQEIEF*
Ga0079957_100006150	F099203	GGAGG	MDRFVCITFGPRNDDPAQFWNERTWWDRQSQAEKWGLKSLSIAGTFGYVVIEDGEDSWKIVDELGAPSHAVSVSAEYKGGVTYSVQPAPVLLGV*
Ga0079957_100006179	F024290	N/A	MTFEDILEEYGQEVLDTYYELFPDKNISKFGDRCCGFVGEYQDFVLECYHSTGSDSLETLEDFMNGVFQEYYYYCEKTATGFVFYNEDR*
Ga0079957_100006182	F000919	GAGG	MRFRKVEFRWSKYNNKYELVRWYEDSIDKEMCYTIAVFDKDKEGYDMRTIGNRFFEDKDAWVVGKYGLEFLNAIFQIEQDEEELK*
Ga0079957_100006183	F020144	AGGAG	MSNFYTCLPGTDVLRSKIDVFTWTNPENENETERVELTVDNAGIFITSCSGGAREDMSIENKDLAIALANAILEAYK*