Scaffold Ga0079957_1000060

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1000060
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78856
• Total Scaffold Genes: 148
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 85 (57.43%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Associated Families: 14

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F000919	Metagenome / Metatranscriptome	834	Y
F001968	Metagenome / Metatranscriptome	610	Y
F003331	Metagenome / Metatranscriptome	493	Y
F004134	Metagenome / Metatranscriptome	451	Y
F004314	Metagenome / Metatranscriptome	444	Y
F004546	Metagenome / Metatranscriptome	433	Y
F004898	Metagenome / Metatranscriptome	419	Y
F007265	Metagenome / Metatranscriptome	354	Y
F007919	Metagenome / Metatranscriptome	342	Y
F023807	Metagenome / Metatranscriptome	208	Y
F023809	Metagenome / Metatranscriptome	208	Y
F027765	Metagenome / Metatranscriptome	193	Y
F085168	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100006010	F004314	GAG	MYDDYDLDYAFSNDYTYDLDEYALDARDLDEDYARDGQDYESLAYRHYA*
Ga0079957_100006019	F027765	N/A	MNNDDIHQFIQAFQDFMKHSEEQIDSYQKWEEAKQYTELFYEQKAAELEITVDYYIAEFV
Ga0079957_10000602	F001968	GAGG	MFDELWQEIQDAPGEIFDLDIPELRDEEKFDVNEYLNGNYDY*
Ga0079957_100006021	F000345	GGA	MTEKQPNELGKALQEWWDSESFKEMQKANEEALQRAVGKYFMLSESEKLDMLQAICYIMCKAEQEGTSHRGLQDALGVYPAGFWVTELMDVHNALWGYYHDQKREQELKDDLDALDKFLGDSSETGTPPLS*
Ga0079957_100006033	F004898	GAGG	MNLTELIEEIREIEIYGSDPADWMGYLGSDDYWVPDEELAY*
Ga0079957_100006041	F023809	GGA	MYTIQLLAPFVAGLCFDNFITKQGDLCNFRQEPPSVVKYYEPGKSCYKNGIFYEKCENSPEVKY*
Ga0079957_100006047	F085168	AGG	MIRKIRILLWNIISDLESRLYPYESEDTQDYYYTIKNDDTGEEYMIIEWIKSFDERIIKLQEDMMWVQSEIRRLNHND*
Ga0079957_100006052	F004546	N/A	MDYTEEFPFDQFPWKLVHKDGKETRKCYFQSEEHRKKHIERYKLKKNEIKLSYKYDD*
Ga0079957_100006056	F003331	N/A	MTEKDKIFRNVWQCAYQRRYNAMCKGDWELYNREHQTLLMCLKIAKWTTFDTDKPVYLKLH*
Ga0079957_100006063	F007265	N/A	MIFQPYNIVPGTDILHSLTDVYELCDEVEGMTYRVELNADNGGVYIKSSEQRHEEGSKNITEDMSIGNKQLSIVVARRILELYGELK*
Ga0079957_100006071	F004134	N/A	MDHIQRSLEERSTTTIRPMTHPANDWEWEDTAEVAFQEWFNDLYTPFTFRCEWFYGDCAVEDLKTREDLLRKWLHSAFLTGYNTGRCSKTDEN*
Ga0079957_100006072	F007919	GGAG	MTERVKFTHITRTICPKTRIHYLDAIDENGYHWTAQQETGVERWITYKEVWKKDPQQPLDL*
Ga0079957_100006075	F000919	GGAG	MRFRNIEFRWSNCNKKYELVKWYKAEVDACEEREYCYVIAFFDKDKEGYDMRTIGDRFFEDKDAWVVGKYALEFLNAIFDIEKEEEELK*
Ga0079957_100006091	F023807	AGG	MEMVRLVDTKLKYRMDFTEEEKEIKDHIMEFQHQVKLNELRDKFEKCWEVDE*