NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1000058

Scaffold Ga0079957_1000058


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1000058 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)79441
Total Scaffold Genes72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (18.06%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045705Metagenome / Metatranscriptome152Y
F079968Metagenome / Metatranscriptome115Y
F086975Metagenome / Metatranscriptome110Y
F088761Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_100005818F086975N/AMLSPRLTHCPECASIPALITEIDCRLAELANNLYNNVVFILNQPVPGGAILDLLNYRRILAYKYCNPDYAAEFTVNMIASRVKILKYK*
Ga0079957_100005835F088761N/AMKNYVINNGAFTASGNFSGYTALGERVHLFGRQMQALGWTKPEDVKFPFYCIGTTKQIGQLDANGKPLVDANGVAVTTDRLTALSAFKTREEIKQAHADAALLDVEIQQEIRNQASTAGLSQHAVDALANAAF*
Ga0079957_100005846F079968N/AMIGTIFRKRVERHEMGTAGKSMYQSWKVTADLGNGIYSCVRVDNTQDPMGAASPQKRTFKLADIQKHLKNKE*
Ga0079957_100005870F045705N/AMEIDVTQLQMGDEFLYSVQGTLARAKVIRPVMPRKVQPSWNPLNRVSYKSVKCIVAMKEKSYTTNWNGNTRTWTRKEYNASEEYTTEKYVDLNHRNIWLIKRN*
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