Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1000053 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1000053 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	81368
Total Scaffold Genes	138 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	96 (69.57%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

81368

Total Scaffold Genes

138 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

96 (69.57%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F001460	Metagenome / Metatranscriptome	690	Y
F001781	Metagenome / Metatranscriptome	635	Y
F005745	Metagenome / Metatranscriptome	391	Y
F017484	Metagenome / Metatranscriptome	240	Y
F033433	Metagenome / Metatranscriptome	177	Y
F057310	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_1000053106	F033433	N/A	MLEILEVEYSVSPGGVDEFEVYSLHEEDVMNPPLFTTTDLLEAVQFCYSLGKDFVVRTLAEWEERQMLI*
Ga0079957_1000053107	F001781	GAGG	MKTDDKDKLNKCLEILDTTDLGLSLVWLWTWSTIKNFMEDETFIMKKTEDEMWDCLCEAVEAGHGFSLEYGAEQHHDDVMEWMLNREYMVDAMFEDEEEEEE*
Ga0079957_1000053108	F005745	AGGA	MNEFSEKLDPHLQRLVDAGVSGLDIMHGHLKILMLEAEANYAEASKIEEDNDYSDAMESMERKYHEGVLDAYVHLYKLTYDLSFAIAGMRNPNED*
Ga0079957_1000053111	F001460	GAG	MLGYTADDVERMINAVHDSKLFYLRYPSDLMDKSQLRADLEDTVSFLQGVLAEGHVQ*
Ga0079957_1000053121	F000808	N/A	LPSTRLERLMDYLYSLTIAYDGELVSTTRSSDLLEIVSAWNNCVDYGDAKEYATYNLSDPSGKMYTKNFYRNGVVNGK*
Ga0079957_1000053131	F017484	AGGTGG	MATLEIFEMNENGAGWVSLENASQSTKLDLELALLTKAEVKMLCFKCHVEIPRGNVCVNHKNVKGAIYFAD*
Ga0079957_1000053134	F057310	GAG	MKITYSIWQGSIIKGSGFTASKMSEVDDTIKELNATDTKPKFEAYISKIEQN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1000053

Overview

Ecosystem & Geography

Associated Families

Sequences