Scaffold Ga0079957_1000008

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1000008
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 153585
• Total Scaffold Genes: 235
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 171 (72.77%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Associated Families: 14

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F006543	Metagenome / Metatranscriptome	370	Y
F007110	Metagenome / Metatranscriptome	357	Y
F007305	Metagenome / Metatranscriptome	353	Y
F008812	Metagenome / Metatranscriptome	327	Y
F009680	Metagenome / Metatranscriptome	314	Y
F012658	Metagenome / Metatranscriptome	278	Y
F036210	Metagenome / Metatranscriptome	170	Y
F042870	Metagenome / Metatranscriptome	157	Y
F043359	Metagenome / Metatranscriptome	156	Y
F056376	Metagenome / Metatranscriptome	137	Y
F059898	Metagenome / Metatranscriptome	133	Y
F070037	Metagenome / Metatranscriptome	123	Y
F078367	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_1000008116	F007110	GGAGG	MNCIYCKSCVGIDRYEFLSETGRKIICKECSVENKAVGFMDWGHKTAPSLVMVPSNAKETIRILDRANRRGR*
Ga0079957_1000008117	F007305	N/A	MKIINKTIRKAYANWNPSPLIRCYHYAAAFDGQKMICFSKNNPIKTNTRAYRIGEQFNLPKYKEYPFVHAESHLISKLLDMYNSIDPSWSIVVMRINRKGLILGSKPCENCDKLLSAVGLNNVFYSTDSGQFIDSFGYSIEAGALTVPMMMV*
Ga0079957_1000008127	F042870	GGA	MSEILPDSKIPWWDNEYEGVYSDDPEDGYAYDMGTKIQE*
Ga0079957_1000008143	F056376	GGAG	MSLIQCFSNVIGHKEAQEIVTDLNQMKSSLSEDFYIKYDKDQDYSKDDNYLVIGNVTKEDWDELNLDMDFMEADII*
Ga0079957_1000008153	F036210	GAGG	MKARYISEMNRIEIQRKYIDHILGSLDFMQIKDKLRDYLDLEKDRESNRSLEAEIRHEAPEILVENWEDFHEPATLTQEKEDYNA*
Ga0079957_1000008168	F008812	N/A	MLIRRKGERMIQWIGVIIALLGLAYNGVKDYQKGDIKIPKLPKKEVLTKVVYPVQYCLMAYDPNVDKVFYLHENGQWHDYAPQQRRYPTTPQVRQDQSQGQAALGGSYGTQGVSGYYYGQQAQATANTTRH*
Ga0079957_1000008171	F000325	AGGAG	MMKTADGNDKLGKGCIVVSRPVGDTCPSDCDYLGNGCYAEGTERQYKNARVAGFANVITEKNKIRAMILDAKKREKSIRWHERGDWFLNGELDTDYVDNVTWACESILASGDSLPDMWFYTHIYDSRLVALEKYMAVYASVHDDNDMNEAKNQGFKLFAWCDSDMKIAPKRPKNKAKADAWRQALPKLVVLNGEKFVTCPEIRRGRSVITCTGTKDSISCDMCVKGLANVLFPAH*
Ga0079957_1000008173	F006543	AGG	MKKFTFVVDVVADELDRDEVVSSIRSCLSDSLPGDVHANVKAGEIKAFSEQGYKVWRARVTGVTAEQAGDAHNAKVTAEATA*
Ga0079957_1000008177	F059898	AGG	MTEDRDKAMVYILGFFRNKMAAVNKHNVSQIKELISTHEIAVSELVDKYVKLVYENS*
Ga0079957_1000008178	F043359	AGGAG	MEWNNSHKNPPAVGQRVYYFGPNIGIGIGHYSYHTDRKIETYYYNENNEKVVDKEIEICQHVFTNQAKPWTCDACDAPFWLPYDEERAKSWCPIIPEEYTRGLYD*
Ga0079957_1000008202	F012658	AGGA	MNSLDKILSAMRTGKYGSVVDTKGNVHVGLINCIMREDGSGRNWIVTLTNRTVNERVFIHAT*
Ga0079957_100000837	F078367	N/A	MQMFNILVWCVYGLFVGSIAKSLVPGDENFNMTKTIALGVAGSYMGGAVLYLVGTYESLSPAGIFMGVAGGVLSLILYNKLTTK*
Ga0079957_100000843	F070037	AGGA	MNFTESFDQFASKLTTMDLALYAGVGLVLWVLFRDKLSPVQKLVLSLTEKIRGVLIPGAPAQSVDTALPVVTKPVVDVEPKNNEDVFFKLVVSWKQTRDLAVKSGCVEAVKVADQMFPFLSPNVCAKKQETVS*
Ga0079957_100000851	F009680	N/A	MSETIIHFWENIATTSIGIIVTMVGFWVAIGRNMATKAEVLVMIETQSPYIHDRQFIMERLNTNKETQAAFASALQRNTEVMNELKVQIVMLGKTLEALEERIERA*