Scaffold Ga0079957_1000004

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1000004
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 165119
• Total Scaffold Genes: 182
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (19.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016969	Metagenome / Metatranscriptome	243	Y
F021517	Metagenome / Metatranscriptome	218	Y
F035761	Metagenome / Metatranscriptome	171	Y
F048260	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_1000004101	F021517	N/A	MIKLKHLVENSTETAYAPLTKEEKVKLRETVKAYNEYRKDLKAECIYATAAKIMEAVNLAERYALKECDEWMEAKMIERDMKDVKKMARQLHEEASKIKGVEHQLEMLYEEIGLKLERYFEIADPVTEAPQAFQTQNHQGSVSTASPPDPAAWGTAAENKELPGAQPITQPHQQPSYQSNK*
Ga0079957_1000004148	F016969	N/A	MSQIKLNKADAQKKVYELTEKLLYVKKDFKDVAAGYKEKIKEIENEIKAVVEEATTTTP*
Ga0079957_100000437	F035761	N/A	LAYLHTYICEYVMDQFVTTVKLDNELYTQFKEINVRARISFQDFVNKCLQKYIEDDSFRNEISESVTQQLSYNQPFQFSNPKDKK*
Ga0079957_100000452	F048260	N/A	MYTRKNTRNKTNFVGHNSTGVELYLSTPFSGAKKAARLTVRAGDTRLDLNGRQIKALRDVLAAGYKA*