Scaffold Ga0079367_1061650

Overview

Basic Information

• Taxon OID: 3300005782
• Scaffold ID: Ga0079367_1061650
• Source Dataset Name: Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 125 cmbsf, PM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Aarhus University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1578
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From Aarhus Bay Station M5, Denmark

Source Dataset Sampling Location

• Location Name: Aarhus Bay station M5
• Coordinates
  • Lat. (^o): 56.10555
  • Long. (^o): 10.463333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F035770	Metagenome	171	Y
F087206	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079367_10616503	F002399	AGG	MKTKSHKSIIGQLRKKYGLKDNTPIHKVEQIMTPKDWQAFSMALTFPNGKPTQGGK*
Ga0079367_10616505	F035770	N/A	MAEFAYARHLRDELGHTGEIIYPNKDASKQDRDGTWLLLTITGQRLGTVSPNGTVRTT*
Ga0079367_10616506	F087206	AGG	MSNIYNEQELEDIQSYVLEQDRKGLLEAEIFDVCIDYRLHADDDRDEILEFITESILYEKNVGGLV*