Scaffold Ga0079367_1007804

Overview

Basic Information

• Taxon OID: 3300005782
• Scaffold ID: Ga0079367_1007804
• Source Dataset Name: Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 125 cmbsf, PM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Aarhus University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5549
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From Aarhus Bay Station M5, Denmark

Source Dataset Sampling Location

• Location Name: Aarhus Bay station M5
• Coordinates
  • Lat. (^o): 56.10555
  • Long. (^o): 10.463333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031354	Metagenome / Metatranscriptome	182	Y
F059653	Metagenome / Metatranscriptome	133	Y
F091296	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079367_10078046	F031354	AGGA	MKTTFDINDILFPVINTEDVRTTIDGRVYRNKKPLNSELQDIVIIPLSNYNGDEIINDATFMVNCYCKNFNNGTPDITRLRAIADAVIAEIEDYNNTSNYYIFDIVNQILLQDVDQKSMSYVNLRISCFIEK*
Ga0079367_10078048	F091296	GGAGG	VIKRYPHTATISYYTPGTYSTAGIYTVGALESIGIVCNIQPNSTKYIIGESGNMIGYSWFISSPIFAGAGDVPKAAKLTFFSKEHIILQLFEYQKHIEMKC*
Ga0079367_10078049	F059653	GGAG	MTNKEALQSQTEYKNDDLLEKLLLDRGVVTGGDYVAANAKDIDLCAANLYFTLAAHPDLREGAFSVKYNGNQLIAMAKTILKKYDMDESTVTGEAIW*