Scaffold Ga0079367_1003183

Overview

Basic Information

• Taxon OID: 3300005782
• Scaffold ID: Ga0079367_1003183
• Source Dataset Name: Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 125 cmbsf, PM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Aarhus University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9865
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (46.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From Aarhus Bay Station M5, Denmark

Source Dataset Sampling Location

• Location Name: Aarhus Bay station M5
• Coordinates
  • Lat. (^o): 56.10555
  • Long. (^o): 10.463333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085104	Metagenome	111	Y
F088228	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079367_100318314	F085104	AGG	MDIHAVVTPTDILKVLEKHRDRYIKTLDDVKRIYEAQTKRYAEAYKEYTQKEINGELTETDKKAKPLEPRMPPDLRKTYDRYIALYKATQEEHVYLSEQHFGEFFLDEWDFIRTHISHLRVLRAGGTGTYLNEEMSAVAANALTMYRS*
Ga0079367_10031834	F088228	N/A	VHECYTHATHARVVSSPGGVIMAESSLDLELLSQEDLIVAALRKLLRTYAELGRREETTRVFLKELCSFSVETRVWWILFEAGGAQRFTDILHIIGCSRTSLSNVLRELLKAGLVRMVENRYQAVSPVWLLPS*