NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066903_106035771

Scaffold Ga0066903_106035771


Overview

Basic Information
Taxon OID3300005764 Open in IMG/M
Scaffold IDGa0066903_106035771 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)634
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014436Metagenome / Metatranscriptome263N
F091501Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0066903_1060357711F091501GGAGGMSKFLLIVCAFGLLLSFAFAEEKSPEQHREESNQIGLQKMNWTRVV
Ga0066903_1060357713F014436GGAGGMTAFLLLVTWLAYNQPPDHYQVPFSSNEACEAARLQLIKDAERIGQSMIERASAQDR

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