Basic Information | |
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Taxon OID | 3300005764 Open in IMG/M |
Scaffold ID | Ga0066903_101572492 Open in IMG/M |
Source Dataset Name | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1245 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions |
Source Dataset Sampling Location | ||||||||
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Location Name | Panama: Oeste | |||||||
Coordinates | Lat. (o) | 9.1086 | Long. (o) | -79.8436 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000533 | Metagenome / Metatranscriptome | 1045 | Y |
F000794 | Metagenome / Metatranscriptome | 889 | Y |
F001448 | Metagenome / Metatranscriptome | 692 | Y |
F004216 | Metagenome / Metatranscriptome | 448 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0066903_1015724921 | F001448 | GAG | VRRTYQPRIVGGKVMMPADLKRLHKYILEVEHIDHISDEIRAVVESEWPDLAYELPPKELH* |
Ga0066903_1015724922 | F000794 | AGGA | VRGGGAMAKATTKLNAQDRVILFCAAAGIEHAAVGILARAMQSMAIRGYIEHDQESGAYVLTASGRAVLAGILEQAGFNIAPR* |
Ga0066903_1015724923 | F004216 | AGGTGG | MTVSRLVALVALVFCFVAGYLLAGFWSSARDTSPLAQICARVDYVDGLQETLKDSASEEMRIEIKALVEQCRTALRKSR* |
Ga0066903_1015724924 | F000533 | N/A | SAAAPVGMPWLWTLAYGHHEDRTPIYGYEPTREEAMTAFAKSWRRE* |
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