NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066903_100929897

Scaffold Ga0066903_100929897


Overview

Basic Information
Taxon OID3300005764 Open in IMG/M
Scaffold IDGa0066903_100929897 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1578
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010636Metagenome / Metatranscriptome301Y
F012905Metagenome / Metatranscriptome276Y

Sequences

Protein IDFamilyRBSSequence
Ga0066903_1009298971F010636AGGAGMKRLSRLMIAPALAAVLLLAWTPTNAARRIGGSPYDGTWSVAIYT
Ga0066903_1009298972F012905N/ALIRTLPCKYDRTHSSYWYVIDKPDQFDAEETARQVQIGVCKNADNSSTMKKEGFSYEYHYRTKDGLALTDFKITTCE*

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