Scaffold Ga0066903_100731506

Overview

Basic Information

• Taxon OID: 3300005764
• Scaffold ID: Ga0066903_100731506
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1752
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001070	Metagenome / Metatranscriptome	787	Y
F006558	Metagenome / Metatranscriptome	370	Y
F009386	Metagenome / Metatranscriptome	318	Y
F017888	Metagenome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066903_1007315063	F006558	N/A	MPAYVRRFDGLDEGEFTEGHELPGKWKIAKQMIGRRLSQAEAKRLLAKFNRH*
Ga0066903_1007315064	F001070	GGAGG	MDKLLGWFPHTSREWIELIIMTMLLWLLMMAILELELV*
Ga0066903_1007315065	F009386	AGGAGG	MAPKPEAARLAYVFGMVLAIAVIMLAITTRNLAAPSASLIYHPQLPLLY*
Ga0066903_1007315066	F017888	N/A	FRHASFAEFEMLMALDDEILKRYGLPKPMVDRALLEAYQTVVLGQPK*