Scaffold Ga0066903_100261305

Overview

Basic Information

• Taxon OID: 3300005764
• Scaffold ID: Ga0066903_100261305
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2687
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000037	Metagenome / Metatranscriptome	4230	Y
F029577	Metagenome / Metatranscriptome	188	N
F034312	Metagenome / Metatranscriptome	175	Y
F088573	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066903_1002613053	F029577	GGAG	MRLVVVALMLLIAGATHAAAQEYQLFPASVAATNLQVQHQAVLVNTATGDIYTCIGTLALEKNGPRLSGLGCQKGEIKAGSAPKGSVVLTVGTHIPPGPFTGVWHVDQANGDVSLCAKVPRGSWWYCGEAHLPH*
Ga0066903_1002613055	F034312	AGGA	MSEWVLHCAVNQRHIRRSQPTREAALKDACAQLLQGHAVNRIVGPNETITAERVRDWCAKHQGDCP*
Ga0066903_1002613057	F000037	AGG	MDKDYLTLKRASASRPSGEWRYDDYDVIADGVVVGRIMKASAAPVGQPWMWTLVLYHEGRTPTHGYEATREAAMAAFAKSWRRE*
Ga0066903_1002613058	F088573	N/A	TLLAGLGCGLALAHGDFLFVAVFGGAIAMTIETIRHFP*