Scaffold Ga0066903_100255450

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066903_100255450

Scaffold Ga0066903_100255450

Overview

Basic Information
Taxon OID	3300005764 Open in IMG/M
Scaffold ID	Ga0066903_100255450 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2711
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location Name	Panama: Oeste
Coordinates	Lat. (^o)	9.1086	Long. (^o)	-79.8436	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030272	Metagenome / Metatranscriptome	186	Y
F079284	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066903_1002554502	F079284	GGA	MNWIGEYIVDDSGHCRWHECLRIQDEQMKAAYRKNILIEFIIETSAIMGVKVGIA*
Ga0066903_1002554503	F030272	AGGAGG	VKKSLYLGVAGLLLAATLLLFSQTASQMPELDKNGKPVLPRPLPHLVYSPGDLLHSGVALPAGIGNATPNTAIIRLGNATKMTVFANCTQSFDLMMSVYTADDQNQSNPNFTLYNSYAIATSMLAGQQQAFLASELAPTVTSGNLGAPVRLPQLAVSFFEKNEAAAAGTCTDRVIVGY*

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