Scaffold Ga0066903_100170446

Overview

Basic Information

• Taxon OID: 3300005764
• Scaffold ID: Ga0066903_100170446
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3182
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000037	Metagenome / Metatranscriptome	4230	Y
F004562	Metagenome / Metatranscriptome	433	Y
F067068	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066903_1001704462	F000037	N/A	VTLILKRASAPPPSGGWNEDDCDVLADDVVVGRIVKAAAVPVGQSWLWTLAFGHHEDRTPTHGYAESREAAMAAFAESWRAG*
Ga0066903_1001704463	F004562	GGAG	MSTTVLAYLIMLMGFITFLGGLFGALILIFEEVAKTGRVPFRYYGMMVGLISGGLGMIGIGQGLRLLLLILGKP*
Ga0066903_1001704469	F067068	AGGAGG	MAPKPHAIFVTFVAVLVMAVFVAITTWAAVPKSHSDSAAPTWAKGVNYRPDLRKLY*