Scaffold Ga0066903_100118875

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066903_100118875

Scaffold Ga0066903_100118875

Overview

Basic Information
Taxon OID	3300005764 Open in IMG/M
Scaffold ID	Ga0066903_100118875 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3663
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location Name	Panama: Oeste
Coordinates	Lat. (^o)	9.1086	Long. (^o)	-79.8436	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005677	Metagenome / Metatranscriptome	393	Y
F028591	Metagenome / Metatranscriptome	191	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066903_1001188753	F005677	N/A	MNHSVARFLIFSLFSVAGLQASDKWMLVNNTHGWSISYPAAWEPYVISSPESEPEPSIQQSDNVNFDGPQGCYERKERCGHFQIWLDSVNANRHFDLKKYVDSEWRDPTVISKEAGQLDGLPVYFIKDPEDQRLVIGKYKRFIFRISYGPTDHKPMDKTLEETFNRMMSSVKFKK*
Ga0066903_1001188754	F028591	AGGAGG	MRKIVGLMFVCLASTVVGLYANPPDKTFEGEWASHRGLDFAVHLHQNGDQLTGYHSAVTKDGSRTDTVPDGEGTPSITGIIKGDNAIVEVRSGYSDALLKVRLTLHGRSLDWKVIEVKTPGEYYIPDKATLYKEHSGPKKG*

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