Scaffold Ga0066903_100061433

Overview

Basic Information

• Taxon OID: 3300005764
• Scaffold ID: Ga0066903_100061433
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4700
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004828	Metagenome / Metatranscriptome	422	Y
F005101	Metagenome / Metatranscriptome	412	Y
F007168	Metagenome / Metatranscriptome	356	Y
F029059	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066903_1000614332	F007168	GAG	MREKIGYCRQKAAECAARAQDAADKDTRALFLRFRDSWLSAANRYESLPSATPDQTPQWRPPPLTPEPSTHDRRERPNDARTDTTAERLGAA*
Ga0066903_1000614333	F005101	GAG	MKDQLTTILDAMRAAQAELDDYLVSADRNAELTIAKLVGILDRRDVVRAMRLLRALERPDGAPQRTLAEAS*
Ga0066903_1000614334	F029059	AGGGGG	MGRSDEYRRYAAECMEMASVFHDPKARATLLLMAQVWLRLAAQGELLDAELQDAEERSHHGEA*
Ga0066903_1000614339	F004828	AGAAGG	MRSKSDHAWRMAAQCAKLAQGADEGDEREFYVRMRDSWITVANRYEFLDGIDEPSAPRERPRSPAGQYIPYPVSRSLERRRVPAPRR*