Scaffold Ga0066903_100002442

Overview

Basic Information

• Taxon OID: 3300005764
• Scaffold ID: Ga0066903_100002442
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14576
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028268	Metagenome / Metatranscriptome	192	Y
F052708	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066903_1000024425	F052708	N/A	MPVLPSENKVSIAMPVDGYVNVARLVTAGIGSQLEFGFEAIDDLQLAIELALRSVPASDGYATVALTRDETGLTVTINGSEGEPLDPRFPDAGEGLDLLSCLGRLVDSVDVVAGPAPAVVLRKNRSTVEAVPGV*
Ga0066903_1000024427	F028268	N/A	MHGPVRPLRLPFFEDTSLVGRIFSREGRARSAIRTGGHWVGYGWFMSFGTVIPLFVFLGGYALHVTFVGAPVARRIYRFGIWTSTLGQDPPGKDKVEAKMSSAGKKPFFERIRPYSPPGWIERRARPFSTPVRVVWFVFVGWWLGAVWVVISWSPFLLPYPLFDTVAALLREVPCTMTLAQPESAPAA*