Scaffold Ga0078117_1103330

Overview

Basic Information

• Taxon OID: 3300005758
• Scaffold ID: Ga0078117_1103330
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5137
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004344	Metagenome / Metatranscriptome	442	Y
F016152	Metagenome / Metatranscriptome	249	Y
F101146	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_11033303	F016152	AGCAG	VETGIDPISLLDAPDGILEAIVIYLKEKAKAANKHGQ*
Ga0078117_11033304	F004344	AGGGGG	MDGLNIKVKTTDGVEKTFSLRPRIIVDFEQKYGKGLAKLIGEEQKLEHIYYLGWLALRANGVVVKPFGPEFLDTLEGVQLDTDPNSESTEIA*
Ga0078117_11033307	F101146	AGGAG	MTYTVISNREVCGKTKGDTITAKELQDAGISAETLIAGNHIKASNTAPQTPSIKTETEEGATK*