Scaffold Ga0078117_1102848

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0078117_1102848

Scaffold Ga0078117_1102848

Overview

Basic Information
Taxon OID	3300005758 Open in IMG/M
Scaffold ID	Ga0078117_1102848 Open in IMG/M
Source Dataset Name	Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2002
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.411221	Long. (^o)	103.905587	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006261	Metagenome / Metatranscriptome	377	Y
F077213	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_11028481	F077213	N/A	TGEIHYVDKIGFHSGDTPVFTRGGFSNFKFDVERSDDSGTTWSVLRNSPVDADSAQIAEINDYETPLDQTVKYRAKARADI*
Ga0078117_11028482	F006261	GAGG	MATISSAYTTTEPIQVDNPAVWSFVAPEDPTIRVTDLLVDQPLNQTIVEAYGVFKPLGASKSVVVAQSIYGVDGTYKITVQGEDAWDELYPLLTYQGTLHVHDPLGRQKYVRFVDRKWSESGPIGNLIRVVDVTYFEVDAP*

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