Scaffold Ga0078117_1056460

Overview

Basic Information

• Taxon OID: 3300005758
• Scaffold ID: Ga0078117_1056460
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5223
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002621	Metagenome / Metatranscriptome	542	Y
F015720	Metagenome / Metatranscriptome	252	Y
F058105	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_10564602	F058105	N/A	MNPHPTIIEAAKLLREKWPTCSTWNDDQLLNWIGIFNKVRQFGIVQDEAGKCVGVGAVRFLNSVVEADDINNNFKDGHIAWIEMVVGTEPRAVQTLWLAMMGMCSKNVTKLGGVRKGVSRLYDFNRYFKLLMNNRICYGRNI*
Ga0078117_10564606	F002621	AGG	LIGSGKHHQPKFNTAMRPKISKLIWLGALPTFLGCQMTKVVLVPSGDPVMLAAPVKARVYAFDSNKKLVGPSTVVLPAGWYALPKN*
Ga0078117_10564607	F015720	N/A	MKNTKTTLAGIGAILVAIGGGMKALFDGDPSTNLDLTATIAAVTAGIGLIWAKDAEKKAE