Scaffold Ga0078117_1047048

Overview

Basic Information

• Taxon OID: 3300005758
• Scaffold ID: Ga0078117_1047048
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4514
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008356	Metagenome / Metatranscriptome	334	Y
F020140	Metagenome / Metatranscriptome	225	Y
F025688	Metagenome / Metatranscriptome	200	Y
F053245	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_104704810	F025688	N/A	MKFVLNVDGTNSGGKFLENYIGQKIDIESLYKNIDVNSPPLAILKTEDGKQHSIQLIDVRFIGDCVFIHCFAIQHDDKHGGKALLRLKPCVNLEKIINP*
Ga0078117_104704812	F020140	N/A	MTHKFAVVVDKNFFNNIQNNHDFYLRVIVLDVIRALVDESEATEKYSNELFYKCAKSIASEVKVFEDENSVIFYLELSSGYLEDFFEKPIDDLE*
Ga0078117_10470482	F008356	N/A	MNVSEFERTKPINTYKKIKQLEKLIKEEQIKTENLYANRIATLDTMLKAVHELMETFKKGE*
Ga0078117_10470489	F053245	N/A	MYYNYYMKQVTINIGDEDLKDIAEIFKNEPDFKPQARQDYLIIEILRQILNNPKAEVSDLVNV*