Scaffold Ga0078117_1033294

Overview

Basic Information

• Taxon OID: 3300005758
• Scaffold ID: Ga0078117_1033294
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4785
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001968	Metagenome / Metatranscriptome	610	Y
F004314	Metagenome / Metatranscriptome	444	Y
F015864	Metagenome / Metatranscriptome	251	Y
F071779	Metagenome / Metatranscriptome	122	Y
F104550	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_10332941	F004314	N/A	SRRVMYDDYDLDYTFSNDYNLDEDSYAEFGTSDLDEDYARDGQDYESLAYRHYA*
Ga0078117_103329410	F015864	N/A	MTKQVQLFEFLYRECQKDPDLLAMVIDEYVVSLSDSKLDELEDFIVNNFGDN*
Ga0078117_10332944	F071779	GAGG	MATNYRVIGFGETEHGFFNEPAFCSSLGYAQGFFEGHKNDPEIKGAVLIKVDHETWQVIDEFGTENTSIVYGPLGTFKVERAPKLVMV*
Ga0078117_10332947	F104550	N/A	MQLTKSFPPADDLVMQLQQIDYRKLLNDYMDFVVTVCAFVAAISTILWEKIQVMKFQTPEFMTDYFYFSVNLIGDPGDEIVGLSVGNRYVGLYNNGIVWGVLNAQGALDNQ*
Ga0078117_10332948	F001968	GAGG	MFDEMWQEIADAPGEIFDIPELNDEDFNLNDYLAADYDY*