Scaffold Ga0078117_1029616

Overview

Basic Information

• Taxon OID: 3300005758
• Scaffold ID: Ga0078117_1029616
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7030
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008879	Metagenome / Metatranscriptome	326	Y
F015312	Metagenome / Metatranscriptome	255	Y
F042225	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_102961610	F015312	GAGG	MKDVGKIKPNTDSTGENGYPEKDVNKGVTHMDMRGAGAATKGKKFVSQINLKNNGKVRAGWS*
Ga0078117_102961611	F042225	AGGAG	MAMTLKEHAKLPASKAHGKNAKGFRAGGKTNLEMKKYGRNMAKVMNQRSPVRKSSGPR*
Ga0078117_10296166	F008879	AGGAG	MAKFKKGDAVKVQAVIPQGPVIALRMDEDGVIYCLVEWTDVEGKAQQRWFAEDELTGV*