Scaffold Ga0078117_1028315

Overview

Basic Information

• Taxon OID: 3300005758
• Scaffold ID: Ga0078117_1028315
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3394
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049574	Metagenome	146	Y
F058961	Metagenome / Metatranscriptome	134	Y
F066738	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_10283154	F058961	N/A	MAKVKEELLNAVKEAQKNMQAIQLELGVIMLAELRKDALLKAYEEQQAEIKKATDAIQAEHGDGNVDLETGEFTPSTGAEVIE*
Ga0078117_10283157	F066738	N/A	MKHTILLIIAGIAVGVVLADQKKQSVQPDPVDAIIEKSKQTMRQASAVSARADKQVSESVSKMKQTIKVLEEEKEQLVEQVKVMKYEIVSIKSAPVQPFDVLAIGVPDTANRK*
Ga0078117_10283158	F049574	AGGCGG	MNYRFLSMDSTIKAYNEAYKFKYHQYHQASKELARRDSIIAELNRQLIIKPTFKKMTQQDVFMTTYFVVFSSVLLYFTL*