Scaffold Ga0078117_1018402

Overview

Basic Information

• Taxon OID: 3300005758
• Scaffold ID: Ga0078117_1018402
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8423
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016958	Metagenome / Metatranscriptome	243	Y
F025943	Metagenome / Metatranscriptome	199	Y
F037190	Metagenome / Metatranscriptome	168	Y
F047645	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_101840214	F047645	AGGA	MYCRHVYENIGLEICPDCGRYTHELNRELDKKLFDEYYASDTPKMYRCPKEGGLIRGWWSI*
Ga0078117_101840217	F016958	AGG	MKLTITSMAGNTSSMELPTKEDVYYFIDLYKSSLKKNQRVKITCDILGIDGYLQGTKPIR
Ga0078117_101840219	F037190	GGAGG	MDRYLLIELGSEGIAIETAQADFYASWLGIALVILSVVGYRIIKRLKKGN*
Ga0078117_10184022	F025943	AGGAG	MNRKFAVIEDNRVINILVNIEEEELFANPGKYIEYTNGWDYSNGIDGGLFFPPLTIPEVSE*