Scaffold Ga0078117_1016127

Overview

Basic Information

• Taxon OID: 3300005758
• Scaffold ID: Ga0078117_1016127
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6713
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F012219	Metagenome / Metatranscriptome	282	Y
F039641	Metagenome / Metatranscriptome	163	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_10161276	F039641	N/A	MIPPAYASALKNAIQAYAYGDRVQIWRNVNQPDGIGGISQHWIQVAEIRATIANTGDTEGIVGGMIEQAGTWMLTCSPDVEIKADDRIYTSGNPQNLAPYYEVIGSDWGHTNQVSQTIALRSRSDG*
Ga0078117_10161278	F001733	GGAG	MNSISIPRLLVVVLVAFTASFTTVFGDGIRTSEAKDVAELGAVMALYGSKAVAAGVSAAMSAALGFLTMPFKGVQANSLKVGK*
Ga0078117_10161279	F012219	AGGTGG	MNLQNFRIEKEPAPSTDWRVFGDIEDDNGNILGTFGQDGTSVNVWWVTQDVGFQAGIVQQFAVIMAQQIVAGTAE*