Scaffold Ga0078117_1014125

Overview

Basic Information

• Taxon OID: 3300005758
• Scaffold ID: Ga0078117_1014125
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1655
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005092	Metagenome / Metatranscriptome	412	Y
F049499	Metagenome	146	Y
F058095	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_10141253	F049499	GGTGG	MTDTIIHMDYRLVDTLNADQLETNDLIGLGDEVVKIIEISPLRFGYALTYENEFGEKDIVDIGDDEIFELYILE*
Ga0078117_10141254	F058095	GAGG	MEYNYVLTTSYDGELVSTHRISDFMEAHEAWAKCVDYGNAKEYATYNLTDPTGKMYTKNFYVNGGVSVK*
Ga0078117_10141256	F005092	AGGA	MDKLEYALRTIANCDLCYGKGYHGFANGEDYDIEDCECNPYGLILDEDGDVIWDNGLLSESELSIFATGEAK*