Scaffold Ga0078117_1013704

Overview

Basic Information

• Taxon OID: 3300005758
• Scaffold ID: Ga0078117_1013704
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5722
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006546	Metagenome / Metatranscriptome	370	Y
F009402	Metagenome	318	Y
F027178	Metagenome	195	Y
F033034	Metagenome / Metatranscriptome	178	Y
F045702	Metagenome	152	N
F089938	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_101370410	F009402	N/A	MKKLDKEFESAGYKYKQIHREGMYAIYERKHIDSNSPPHYESIKIQSHDGMEIAGKKLPPSEFYPSSNSWGRHGFTSINRKSAYERLDRMMKDNIENKEKAEKRKSK*
Ga0078117_101370411	F006546	N/A	MKWKYIGNRAGDATKGEQYIIEADELTELYMKEMPYPQFVKVYVVQPPSPRKNFMTMKAGDIIKICNPYYDMQHYSHPGFIPVKE*
Ga0078117_101370412	F089938	N/A	MLNIDQAFTVQEFVRVNRTRRVWEIQDELYNLICILTKTEEEKKNETETPAA*
Ga0078117_101370413	F033034	N/A	MKVVKLTKKAQDIVNQIMTADAVDVDHGSIGERIAYGNMNLTGEGLEFDVNVDGDPGEMTISNEALNAANIVDGVIVIDSNDIKNNHYGDMTITLYKLSKINAV*
Ga0078117_101370415	F045702	N/A	MTITQTLNRTAGRFTTLVVNKGATNNTYCAQISSATDKNVRFYDVNADANRVVPTASVVYARSGKVQYRKPRK*
Ga0078117_10137044	F027178	N/A	MVMIKDGGKWEEYARLKSKDLAETVLRLVSKDFPAKIVELK*