Scaffold Ga0078117_1011171

Overview

Basic Information

• Taxon OID: 3300005758
• Scaffold ID: Ga0078117_1011171
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3451
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000868	Metagenome / Metatranscriptome	853	Y
F001019	Metagenome / Metatranscriptome	804	Y
F004666	Metagenome / Metatranscriptome	428	Y
F005745	Metagenome / Metatranscriptome	391	Y
F050227	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_101117112	F000868	GGAG	MASFLENENQMVIDAEMSEIADQLLEDWINSNLDEGQLYSDWRIADMSSSNYLKGRFNQFYDLKPEDQYYLEWDEVE*
Ga0078117_101117113	F050227	N/A	CRDCDSDNTMEYCENDCGEICSSCNNLGEADLDLVKECQTHKIYLDSEHVPDYRMEQVNG
Ga0078117_10111714	F004666	AGGA	MTTKREYLASKGITVGRRGRFSAAAKQALAEAEKSGVKFTSETKQK*
Ga0078117_10111716	F001019	GGAGG	MSNYEPTLEILEIEYSVSPGGVDTFEVYEINRIPLDCPIFETESLTDAVQFCYNLGQDFIVRTLAAWHRNEDTYAVV*
Ga0078117_10111719	F005745	AGGAG	MHYDIENSEDLAPHLQRMVDHGVSGLDIMHGELKNLMLMADARFTEAQETEEENDYSDAMESMERKYWEGMSDAYTHLYKLTYDLSFAIAGLRKDDNGE*