Scaffold Ga0078117_1004752

Overview

Basic Information

• Taxon OID: 3300005758
• Scaffold ID: Ga0078117_1004752
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5366
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009603	Metagenome / Metatranscriptome	315	N
F028809	Metagenome	190	N
F050365	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_10047522	F009603	GGA	VFTYTVATKRSYLRTTYASKGALSLLEALTAKLTASANSQESGQIVRSTSSSDVSVEFAEPGKGTAAPIEFLEMWESLLSDYDYAVTLLAGDGITNPTDLQIYNKMLGTILVSTTRYYGDFTQFRREPTVRMS*
Ga0078117_10047524	F028809	GGA	MSEILNCQTPAGRESLRHNRIALKAIERQTGFEFLGISNDEPSRIDGFIHDPSNHQIVGSYEVKTRNYSLTKLQTTYGNRWLISWSKLQAALMVTKELRVPFFGVLHLFDDDLVMMQEIFNKSGSWAANHQAVDKTVNGRTERVGMIDMSGATIFQIKSGQTELF*
Ga0078117_10047526	F050365	N/A	MTQKEYVEHSGLTKGRVSQLVAAGMPLTSPEEADRWRGSRKGIGGRPSNVQRMAALHKQEAVFNEAAASLPEGPHRPPEATNAVNASLVGSDTPAGAYERQKQIERASYGLAVQALRNKTMDAGRMVTVHAAAAKNLINARQDVIALAEKERSLVSGSWVKKVMQEHDGAVASLLKAMPKQLAGRIAPHDPEHAERELERWVQEVCLKTLHSTDPWK*