Scaffold Ga0078117_1004508

Overview

Basic Information

• Taxon OID: 3300005758
• Scaffold ID: Ga0078117_1004508
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2784
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000450	Metagenome / Metatranscriptome	1126	Y
F018349	Metagenome / Metatranscriptome	235	Y
F031384	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_10045081	F031384	AGGA	MPNWVYNGLTIEGNPALVNDLVKQMNKPFVMLHDSWNPTSGNMEVSQTTYPNPVFAFYNI
Ga0078117_10045083	F000450	AGGA	MGDRANFVFVQDSGETIVLYGHWAGHNMLTNLAEAVVAARHRWNDDSYATRIAISHMIGNSWSDETGWGLQVNSISDNEHKIPVINWKDSTFSLHNEDSHYNKDNKVRGMSNDAIFTMDLSAFCEKYTDSLLPV*
Ga0078117_10045085	F018349	AGGAG	MDYRDGFEDGVKFTREVIIANIRQWAADAILGEEGQIMDDIADKIEFGTLDNDL*