Scaffold Ga0078117

Basic Information
Taxon OID	3300005758 Open in IMG/M
Scaffold ID	Ga0078117_1004476 Open in IMG/M
Source Dataset Name	Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005758 Open in IMG/M

Scaffold ID

Ga0078117_1004476 Open in IMG/M

Source Dataset Name

Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Singapore Centre on Environmental Life Sciences Engineering (SCELSE)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4836
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4836

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (22.22%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.411221	Long. (^o)	103.905587	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Singapore

Coordinates

Lat. (^o)

1.411221

Long. (^o)

103.905587

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023555	Metagenome / Metatranscriptome	209	Y
F025977	Metagenome / Metatranscriptome	199	Y
F048942	Metagenome / Metatranscriptome	147	Y
F068754	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_10044762	F023555	GAGG	MDHMNTFKAIGLADPFFTIKTAFYKKGKFGRQSQFFEWELKKGEDIYIEFYENTYDNDGRSTGIEPMLAERQLFKLKYNPYFHEEYDVTETVDPDGKIDRKYLIPVNEMVAVLSNGQEISYALYEKRKEEAALEIPQLQSTLSIFPDFEEEFAPKTNETSNEVSEILLEIAENFKKLATALKGK*
Ga0078117_10044764	F025977	N/A	MEDIFLKLVRENITPNSYYILHCIKNGIIPCSFVNKDLEIRRLISENWLNEDLTLTDKSIIFTTEIEGYFKKSKKKTSKDLMGHNFMQNIEAYVTIFPNKKLSSGKYARVPAKNLENAFRWFFEMYDYSWETIFAATQKYVLEYESKNYEYMRTAQYFLRKQNVDKSWDSDLATYCEFLKDNPDDDVVLFPDLIV*
Ga0078117_10044766	F048942	N/A	MAIKVKEMKDDAIVEIKVNKSFYLMAKAASFTILNTMNIQEKNEEYLKKLMNSTYEELEPVERTFYTIILLLAEIEKQATEANLYNEKEVLEPGDPGYVAPTED*
Ga0078117_10044769	F068754	N/A	GTLLDIYFKMETQEIKKLVAAIAEEHYSITDGVDGNLNYLWYMYHKGTKKDEFRPFVYMAELMLLKKYNYITTTEVQNVVEMMKSDDKDNLHMATLTIKNLRELRIKEHGIYSKDNKAYKDLNYTYAFDVLNHTVFLQTMAEK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0078117_1004476

Overview

Ecosystem & Geography

Associated Families

Sequences