Scaffold Ga0078117

Basic Information
Taxon OID	3300005758 Open in IMG/M
Scaffold ID	Ga0078117_1003583 Open in IMG/M
Source Dataset Name	Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005758 Open in IMG/M

Scaffold ID

Ga0078117_1003583 Open in IMG/M

Source Dataset Name

Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Singapore Centre on Environmental Life Sciences Engineering (SCELSE)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26445
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (15.22%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

26445

Total Scaffold Genes

46 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (15.22%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.411221	Long. (^o)	103.905587	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Singapore

Coordinates

Lat. (^o)

1.411221

Long. (^o)

103.905587

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050992	Metagenome	144	N
F057997	Metagenome	135	N
F066595	Metagenome	126	N
F068604	Metagenome	124	N
F075863	Metagenome	118	N
F102810	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_100358310	F068604	N/A	MANALRLTANGGCEYIDNTVARTGKKYYCFIVQADTVVATLTGGFAPDTTTNYLTSIGLSGKTLKQGAIIYAPGDAVFTNLTLTSGSIIAYSE*
Ga0078117_10035832	F057997	GAG	MILMYFIKKQAMENKKQTFKEVFSEMKELFKDIFQDEIKDLKFADYKAKDGSIIRTDTEEIAIGSKLQVITPDGVMDLPVEITEMVIMVNEMPMKVYVENGVVKGIEPEEVIEEPVMEEMASDNNEQFEAKFAELNERLSKLEAALGLSNQALEAANNSILAQTDLNRKLFSLIEKVADAPSVEPKSTSKENFKKAQPTSLEEFRKKVYNY*
Ga0078117_100358321	F075863	N/A	MKKTQSMAILDALLAGIVVNGSNAYAITKKECKCGTLNLHKLIAIIRELGYTVNEEWKTNPKTKTGYKEFSITNKKQKKNGN*
Ga0078117_100358334	F102810	N/A	VIEELVNNKIYKQITRNICHNHELLEDLHSEAIIVIIEKQIDFSTIRNLRHYFSTVCWLTWHSNKFRKRYFVEHVTFVDNLNEIVEQNDNIDYSALISFLNDSPQTENEFYEQNLLKLYIQHGDAKKLSDKTKIPYRTVANDIKKIKEKLKRQHNEKNSHQSEHGEP*
Ga0078117_100358342	F066595	AGGA	MFQLLATTYIIAKFIPKPLWLHRKPFTCPLCLTYWTFLIYQIINFTTYFDLITIPFTFALIASLFERLNDRYL*
Ga0078117_100358343	F050992	AGG	MTEEIKQSLLNWESMGKNYSPTFNWSELNEIAIKSGNKPFNLGCSECRRQLLDYLLAIIKDGASK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0078117_1003583

Overview

Ecosystem & Geography

Associated Families

Sequences