Scaffold Ga0078117_1003312

Overview

Basic Information

• Taxon OID: 3300005758
• Scaffold ID: Ga0078117_1003312
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1423
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F014847	Metagenome / Metatranscriptome	259	Y
F016528	Metagenome / Metatranscriptome	246	N
F028095	Metagenome	192	Y
F043356	Metagenome / Metatranscriptome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_10033121	F043356	N/A	MKIDISSIDRTQFMVHEHSLNGEIVHLIQPQHIGTQWRQDNKHLRSVVVNYEGEVISA
Ga0078117_10033122	F028095	N/A	MTEQIYMKLNDKVKRPTLSKEKINRENKHFKRVVDQYERWCKDGGGYETRETYEDDIIKCLFESDHDGYQLAEFLKKEVYIEPDSELVDILDGVSTVMYSLTKEILGQWTKENFLEIPSDVIGKKVNAKQGYRKYENHYITGIKPETYEVTIAEDTNNNKKGGWVIRYEDITFLD*
Ga0078117_10033123	F000962	N/A	MNIHVPEEVKNKYPHMEFRGKQRIINDRTVIEAYNHATDQNFYYSFDEDFFWFAGQIPDYKLPKVS*
Ga0078117_10033124	F014847	GAG	MERLNNMEFESDEEILVNTMDCIRDLHEENARLMQEVEQLKEENKEFNRKLKSIQALFL*
Ga0078117_10033125	F016528	N/A	MINNNELFAKVLADNPLPYHFGDKVNTNRGIGFISGYNFKDREKTWKFTIRPFGLSNYYTDVETVYGKVE*