Scaffold Ga0078117

Basic Information
Taxon OID	3300005758 Open in IMG/M
Scaffold ID	Ga0078117_1002532 Open in IMG/M
Source Dataset Name	Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005758 Open in IMG/M

Scaffold ID

Ga0078117_1002532 Open in IMG/M

Source Dataset Name

Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Singapore Centre on Environmental Life Sciences Engineering (SCELSE)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29136
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (17.65%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

29136

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (17.65%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.411221	Long. (^o)	103.905587	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Singapore

Coordinates

Lat. (^o)

1.411221

Long. (^o)

103.905587

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002018	Metagenome / Metatranscriptome	603	Y
F002391	Metagenome / Metatranscriptome	564	Y
F012345	Metagenome	281	Y
F015976	Metagenome / Metatranscriptome	250	Y
F054038	Metagenome / Metatranscriptome	140	Y
F088546	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_100253210	F088546	N/A	MKIKEEYKGKTIITYDSVLGQRRVEVDKIDLKRFTYYQSIGLGYLFEKEAQTISYTGIDQEVVQADAVEEPKPVIKKTRKRRNNATTN*
Ga0078117_100253218	F002018	GGA	MTSYQALINEITDFYNNHVQVKKVGSDFKEQMFNFATKDEKYPIVFIVPVSALATENTNDFILEIYCFDIIQKDRENINVILSDCQQILYDLYTYFINSNNYNFDLVDTPTFNPLNNDLLDYAAGWVMTATFAVNNWTDCAVPLKQQGN*
Ga0078117_100253219	F002391	N/A	MSSNLIGELVGNMGTFVVNTTIEVTKNIDAIVILEESIFTSIKINGVDAKNEYIQDATLAVKAGAIITPINNLQFSGVQLTSGSVVLVLG*
Ga0078117_100253223	F054038	AGG	MAYKNNGVFNVKYKTRNKIARTLKQIIASEALIDTGALYDSIRINAQIPALGELEIQILAMYYFGYLNNGTINMVKFDLCKKLTEALAANGTTAEIFEQYTEWMTQRYPILQVATILGEKRNLIYTFEPIGGNFDWPLEFTGV*
Ga0078117_100253234	F015976	N/A	MKSKLFSAYTLILSLILAIFVTSCTANYHVRKAIKKGYRCDTIADTITINSIDSIPYVLRDSIAWERVIVHKDTIVRYKRSYVPKTRLETRIEYRLKRDTLKLIEKVEVVKYKTERNKNKKPNLWLFIIGFGAGFITNWLLKFSKLPL*
Ga0078117_100253239	F012345	N/A	MRFKLSYHVGNKILQEWVFTSKSLCYWKKSDLLNTGMFNDGIFKITEI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0078117_1002532

Overview

Ecosystem & Geography

Associated Families

Sequences